Daizu-net
  
for functional genomics research of soybean
  
gene information  : 
  
[Last update: 1st, May, 2024]
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   Dotplot Enrei vs NARO genomes ▶
Fukuyutaka v3.12
Himeshirazu v3.02
Miyagishirome v3.01
Tanba v3.02
Ooyachi2 v3.03
Kosuzu v3.01
Peking v3.01
Jack v3.01
Harosoy v3.01
UA4805 v3.01
   Dotplot Enrei vs reported genomes ▶
Williams 82 Gmax508
Williams 82 Gmax275
Williams 82 Gmax189
Lee gnm1
ZH13
ZN6
SoyC01
SoyC02
SoyC03
SoyC04
SoyC05
SoyC06
SoyC07
SoyC08
SoyC09
SoyC10
SoyC11
SoyC12
SoyC13
SoyC14
SoyL01
SoyL02
SoyL03
SoyL04
SoyL05
SoyL06
SoyL07
SoyL08
SoyL09
SoyW01
SoyW02
SoyW03
SoyW05
TASUKE+
   Enrei v3.31 reference ▶
   public data, 208 lines (CC/+)
   public data + JP cultivar, 467 lines
   Williams 82 Gmax508 reference ▶
   public data, 208 lines (CC/+)
   public data + JP cultivar, 467 lines
e-TILLING
Expression atlas
GO analysis
Sequence analysis
Blast+
Short DNA mapper
Primer finder
Clustalw (fasta input)
Tm calculation
Download
e
-TILLING (Variant Finder)
query (input):
! Please input gene ID or marker ID like below, then click "Search". Accessions or Mutants are listed if they carry DNA variant within the query gene. Glyma.07G254600 Glyma.08G238100 Glyma.15G243300 GlymaJER.01G057564.1
Database:
Resequencing of 207 G.max lines including NARO core collection [ Enrei genome reference, ver3.31, GFF=3.32 ]
Resequencing of 207 G.max lines including NARO core collection [ Williams 82 genome reference, Gmax_508 ]
Resequencing of 467 G.max lines including NARO core collection, cultivars, and publicly available data [ Enrei genome reference, ver3.31, GFF=3.32 ]
Resequencing of 467 G.max lines including NARO core collection, cultivars, and publicly available data [ Williams 82 genome reference, Gmax_508 ]
cutoff conditions:
min GQ :
   min read depth :
   min read supporting ALT :
   flanking target (bp) :
  
Haplotype analysis:
off
one transcript
all transcript variants
*num query is restricted to 1.
[! Result will be shown below]
News!  
Our paper has been published. Please cite the following paper:
  - Yano et al. (2025) The genomic landscape of gene-level structural variations in Japanese and global soybean
Glycine max
cultivars.
DOI: 10.1038/s41588-025-02113-5